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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3315813_3317083_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3315813 - 3317083
Intron Length:
1271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGTTC
5'SS Class:
major
3'SS Sequence:
TCCTCTAATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTCCTCTAATT
Flanking Amino Acid:
KKSQENRIEKFLDVVQLVQR
Intron Amino Acid Position:
1646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
66.7
39.8
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
71.8
0.49
0.9
70.6
33.8
Minor 5ss
40
-1.1
3.6
58.4
46.5
Minor BPS
67.4
0.63
1.6
86.17
33.5

Associated Gene:

Gene:
SPHKAP
Ensembl Gene ID:
ENSAPLG00000008536
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008875
3244622 - 3317227
72606
ENSAPLT00000040409
3300251 - 3317227
16977
ENSAPLT00000039864
3247564 - 3317227
69664
ENSAPLT00000021916
3244353 - 3317227
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