Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3338138_3341815_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3338138 - 3341815

Intron Length:

3678

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGAGTC

5'SS Class:

major

3'SS Sequence:

CCTTCTATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTCTAT

U12 Branch Point Sequence:

CCCCCTTCTATT

Flanking Amino Acid:

QEDHKFYLFKVLRAHMLPLT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.3

73.3

36.4

Major BPS

61.5

0.29

1.3

62.1

44.1

Major PPT

83.6

0.75

0.8

29.4

Minor 5ss

30.4

-2.2

3.4

41.8

44.9

Minor BPS

43.5

-0.4

1.8

52.7

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008214

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046014

3323461 - 3343028

19568

ENSAPLT00000008556

3323884 - 3343039

19156