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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3354925_3355211_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3354925 - 3355211
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
TTCTTTTCAACA
Flanking Amino Acid:
VWVKKHLLFLSHKLKKMSM*
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
83.7
0.76
0.8
81
29.6
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
66
0.5
1.5
74.67
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029592
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043628
3354897 - 3356531
1635