About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3355290_3356094_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3355290 - 3356094
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAGGTTAC
5'SS Class:
major
3'SS Sequence:
ATTTATTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCATTATTT
Flanking Amino Acid:
SSEVCDIDAIIFHTFSGLKA
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71.4
35.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86
0.81
0.8
77.6
40.7
Minor 5ss
41.5
-0.9
3.1
56.1
42.1
Minor BPS
62.4
0.47
1.9
82.24
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029592
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043628
3354897 - 3356531
1635