Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3356210_3356455_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3356210 - 3356455

Intron Length:

246

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

TCCTTGATTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TTTTCCTTGATT

Flanking Amino Acid:

GLLLLCSTSQAQSNQDCCLS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

74.9

35.3

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

78.2

0.64

0.9

69.3

40.5

Minor 5ss

27.6

-2.6

32.2

42.5

Minor BPS

89.6

1.33

0.7

99.24

21.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029592

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043628

3354897 - 3356531

1635