Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3371237_3371574_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3371237 - 3371574

Intron Length:

338

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTCTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

TTTCCCCAAAGA

Flanking Amino Acid:

GPDKNLTIDEVTNQIFPVWT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

81.2

33.3

Major BPS

73.9

0.59

30.2

Major PPT

85.2

0.79

0.6

81.1

Minor 5ss

48.8

-0.1

3.1

72.7

44.5

Minor BPS

48.1

-0.1

2.2

69.55

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008141

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026230

3368408 - 3391270

22863

ENSAPLT00000008443

3368408 - 3377183

8776

ENSAPLT00000008415

3368408 - 3376047

7640