About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3394756_3396176_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3394756 - 3396176
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTCTA
5'SS Class:
major
3'SS Sequence:
TTATCTCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TATCTCTTGAAG
Flanking Amino Acid:
QQTAFGQQPNGAGFAAFGQA
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.7
41.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
74.8
0.56
1
76
32.7
Minor 5ss
36.5
-1.5
3.3
46.1
44.4
Minor BPS
57.2
0.08
1.5
61.89
39.6

Associated Gene:

Gene:
AGFG1
Ensembl Gene ID:
ENSAPLG00000007855
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039606
3394251 - 3429870
35620
ENSAPLT00000035378
3394251 - 3429870
35620
ENSAPLT00000031018
3394251 - 3429870
35620
ENSAPLT00000008174
3394251 - 3429870
35620