About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3401197_3402555_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3401197 - 3402555
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTCTTTTAATC
Flanking Amino Acid:
NLDNIFSAGQGGSEQGSGFS
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
87
30
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.9
0.76
0.7
76.9
31.7
Minor 5ss
42.9
-0.8
2.7
59.7
44.8
Minor BPS
67.9
0.54
1.2
70.66
35.2

Associated Gene:

Gene:
AGFG1
Ensembl Gene ID:
ENSAPLG00000007855
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035378
3394251 - 3429870
35620
ENSAPLT00000031018
3394251 - 3429870
35620
ENSAPLT00000008174
3394251 - 3429870
35620
ENSAPLT00000039606
3394251 - 3429870
35620