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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3402766_3404390_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3402766 - 3404390
Intron Length:
1625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAACTC
5'SS Class:
major
3'SS Sequence:
ACTCTTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TCACATCTAACT
Flanking Amino Acid:
SQSSFQPQNTGGSAGSVNAN
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
63.2
41.7
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
78.6
0.64
0.9
72
37.4
Minor 5ss
34.5
-1.8
3.6
50.3
46.3
Minor BPS
48.9
-0
1.8
68.19
42.1

Associated Gene:

Gene:
AGFG1
Ensembl Gene ID:
ENSAPLG00000007855
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008174
3394251 - 3429870
35620