Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3402766_3409258_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3402766 - 3409258

Intron Length:

6493

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTATT

5'SS Class:

strong_major

3'SS Sequence:

ACTCTTGTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTAAC

U12 Branch Point Sequence:

TCACATCTAACT

Flanking Amino Acid:

ANFAHFNSHTGGSAGSVNAN

Intron Amino Acid Position:

369

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.7

1.08

0.6

12.4

Major BPS

75.8

0.64

0.9

75.6

25.3

Major PPT

78.6

0.64

0.9

37.4

Minor 5ss

36.2

-1.6

2.9

50.6

45.9

Minor BPS

48.9

-0

1.8

68.19

42.1

Associated Gene:

Gene:

AGFG1

Ensembl Gene ID:

ENSAPLG00000007855

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031018

3394251 - 3429870

35620