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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3409416_3409893_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3409416 - 3409893
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ATGTTGTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTGTCTTATCT
Flanking Amino Acid:
LHLNKGTPSQSPVVVRSQGQ
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
75.4
0.57
0.9
70
40.8
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
69.2
0.68
1.7
87.15
38.9

Associated Gene:

Gene:
AGFG1
Ensembl Gene ID:
ENSAPLG00000007855
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035378
3394251 - 3429870
35620
ENSAPLT00000031018
3394251 - 3429870
35620
ENSAPLT00000008174
3394251 - 3429870
35620
ENSAPLT00000039606
3394251 - 3429870
35620