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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3410717_3420974_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3410717 - 3420974
Intron Length:
10258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTACAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TTTTCTGTGATT
Flanking Amino Acid:
IEFLQKHGNEVCKQIWLGLF
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
71.7
0.49
1.1
72.7
41.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
63.4
0.5
2
86.34
34.1

Associated Gene:

Gene:
AGFG1
Ensembl Gene ID:
ENSAPLG00000007855
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039606
3394251 - 3429870
35620
ENSAPLT00000035378
3394251 - 3429870
35620
ENSAPLT00000031018
3394251 - 3429870
35620
ENSAPLT00000008174
3394251 - 3429870
35620