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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3450349_3450491_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3450349 - 3450491
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCGGTGAGG
5'SS Class:
weak_major
3'SS Sequence:
CTGGTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CGGCTCCTAACC
Flanking Amino Acid:
EQQRLEAPPRRSEQPGWDYH
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.3
0.03
1.3
46.7
42
Major BPS
72
0.55
1
71.8
31.4
Major PPT
65.3
0.34
1
57.9
38.5
Minor 5ss
15.1
-4
3.6
21.4
37.7
Minor BPS
49.2
-0
1.7
56.89
41.5

Associated Gene:

Gene:
MRPL44
Ensembl Gene ID:
ENSAPLG00000017027
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026601
3447279 - 3450679
3401