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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3453192_3453560_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3453192 - 3453560
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
VVDAASLRRQIIKLNRRLQL
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.1
0.72
0.8
74.6
39.9
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
MFF
Ensembl Gene ID:
ENSAPLG00000003615
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026924
3452951 - 3471516
18566