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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3453646_3456276_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3453646 - 3456276
Intron Length:
2631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTAACCTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATCTCTTTAACC
Flanking Amino Acid:
TSSNPHHDNTRYGLSNMDTT
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
66.8
0.38
1
62.3
39.5
Minor 5ss
33.3
-1.9
3.3
48.8
47
Minor BPS
80.2
0.93
1.1
80.43
34.5

Associated Gene:

Gene:
MFF
Ensembl Gene ID:
ENSAPLG00000003615
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026924
3452951 - 3471516
18566