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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3479685_3479942_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3479685 - 3479942
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACA
Flanking Amino Acid:
LASLNPRRMFRKPLPQTLKA
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
86.1
0.81
0.7
85.5
29.2
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
80.4
0.95
1
83.49
30.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014524
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015403
3479600 - 3502960
23361