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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3498125_3499363_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3498125 - 3499363
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGACTA
5'SS Class:
major
3'SS Sequence:
CTCTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTTGTTTACAT
Flanking Amino Acid:
AGNLGQPGEKGDPGMIIHGE
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
65.5
40
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
78
0.63
0.9
71.9
38
Minor 5ss
38
-1.4
3
48.5
47.1
Minor BPS
49.5
0.04
2.1
73.53
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014524
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024404
3491024 - 3499420
8397