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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3504128_3504494_R

Intron Information:

Intron Rank:
141336
Intron Class:
major
Intron Phase:
Intron Coordinates:
3504128 - 3504494
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTACAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.2
0.88
0.7
84.5
30.4
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
56
0.19
1.9
73.42
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023385
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028850
3503600 - 3509114
5515