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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3505795_3506913_R

Intron Information:

Intron Rank:
141338
Intron Class:
major
Intron Phase:
Intron Coordinates:
3505795 - 3506913
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACATTT
5'SS Class:
major
3'SS Sequence:
ATTTCATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
77.6
33.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.5
0.66
0.8
73.3
35.5
Minor 5ss
44
-0.7
3.2
64.8
46.5
Minor BPS
63.1
0.41
2
79.19
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023385
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028850
3503600 - 3509114
5515