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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3520200_3520907_R

Intron Information:

Intron Rank:
131714
Intron Class:
major
Intron Phase:
Intron Coordinates:
3520200 - 3520907
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAACC
5'SS Class:
major
3'SS Sequence:
TTACTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TGTGCATTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
66
38
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
79.6
0.67
0.9
73.4
36.9
Minor 5ss
33
-1.9
3.2
44.5
43
Minor BPS
67.6
0.55
1.7
77.59
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018047
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037754
3519895 - 3521366
1472