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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3545922_3548176_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3545922 - 3548176
Intron Length:
2255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTATCAGG
5'SS Class:
major
3'SS Sequence:
AATTTTTAGGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATTATTAAATT
Flanking Amino Acid:
WLFLIVRLEIGYAYIDPCGG
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.3
57.6
46.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
49
-0
1.8
59.1
45.6
Minor 5ss
35.2
-1.7
2.7
41.5
44.5
Minor BPS
58.4
0.34
1.8
77.77
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025974
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040371
3545810 - 3563211
17402