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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_355372_376714_F

Intron Information:

Intron Rank:
144110
Intron Class:
major
Intron Phase:
Intron Coordinates:
355372 - 376714
Intron Length:
21343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTCTTTACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.6
0.76
0.8
80.2
30.8
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
67.4
0.53
1.7
79.33
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027675
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037733
355195 - 384705
29511