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Intron Name: Anas_platyrhynchos_platyrhynchos_9_3559397_3563202_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3559397 - 3563202

Intron Length:

3806

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTATGTTAA

5'SS Class:

weak_major

3'SS Sequence:

TACCTGGGTGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCTTCAA

U12 Branch Point Sequence:

AAACCTTCAAGC

Flanking Amino Acid:

NGYIGPRGPCHH*

Intron Amino Acid Position:

162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.4

0.41

1.1

65.8

36.1

Major BPS

65.8

0.39

1.1

69.2

36.3

Major PPT

46.7

-0.1

1.7

49.3

43.6

Minor 5ss

47.6

-0.2

2.5

57.9

46.7

Minor BPS

46.6

-0.2

1.8

52.88

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025974

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040371

3545810 - 3563211

17402