Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3584692_3585758_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3584692 - 3585758

Intron Length:

1067

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTAAA

5'SS Class:

major

3'SS Sequence:

ATTGGTTTCAGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AATTAAC

U12 Branch Point Sequence:

TTAACTTCAGGT

Flanking Amino Acid:

SGECGDMGMKGAPGFPGKNG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

1.1

77.1

32.8

Major BPS

73.1

0.57

0.9

73.7

27.1

Major PPT

53.3

0.07

1.7

60.9

44.2

Minor 5ss

37.5

-1.4

2.4

42.6

44.3

Minor BPS

45.6

-0.2

65.88

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027503

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026141

3583114 - 3585919

2806