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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3595966_3596789_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3595966 - 3596789
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTTACT
Flanking Amino Acid:
QGPPGLDGIRGQPGNPGPPG
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
78.3
30.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.2
0.81
0.7
82.8
27.4
Minor 5ss
40.5
-1.1
2.7
50.4
46.1
Minor BPS
67.9
0.64
1.6
84.01
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013112
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013821
3595858 - 3607708
11851