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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3596946_3597623_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3596946 - 3597623
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGATCA
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
AATTGTATAATT
Flanking Amino Acid:
PGNQGREGPKGPMGIHGPQG
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
64
36.8
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
89.4
0.89
0.7
81.6
35.5
Minor 5ss
43.9
-0.7
2.8
48.6
47.1
Minor BPS
50.5
0.09
2
72.28
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013112
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013821
3595858 - 3607708
11851