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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3597723_3598040_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3597723 - 3598040
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTATG
5'SS Class:
major
3'SS Sequence:
TTTTTCACATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACATCA
Flanking Amino Acid:
QGKPGPKGPTGFIGDPGEPG
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
74.8
41.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.4
0.68
0.9
80.1
31.8
Minor 5ss
38.3
-1.3
3
51.3
45.2
Minor BPS
49.6
-0
2
72.36
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013112
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013821
3595858 - 3607708
11851