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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3599072_3600479_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3599072 - 3600479
Intron Length:
1408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TACATTTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTACATTTATCT
Flanking Amino Acid:
SGPIGHPGPQGRKGEEGSCG
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
69.9
0.45
1
62.6
43
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
55
0.24
1.8
75.49
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013112
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013821
3595858 - 3607708
11851