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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3606841_3607444_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3606841 - 3607444
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGATCTTTCATT
Flanking Amino Acid:
SLWIGYSFLMHTGSGDQGGG
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
100
1.24
0.5
100
0
Major PPT
84.7
0.78
0.8
81.7
35.4
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
57.2
0.31
1.7
71.73
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013112
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013821
3595858 - 3607708
11851