About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3618989_3629825_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3618989 - 3629825
Intron Length:
10837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CATTGTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTGTGTTTCATT
Flanking Amino Acid:
RAVLNSLNERDFGGATYNNE
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
75.8
0.58
0.9
69.8
36.3
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
50.4
0.09
2.2
74.76
43.2

Associated Gene:

Gene:
RHBDD1
Ensembl Gene ID:
ENSAPLG00000013107
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013647
3618846 - 3644709
25864