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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3773491_3773812_F

Intron Information:

Intron Rank:
129242
Intron Class:
major
Intron Phase:
Intron Coordinates:
3773491 - 3773812
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAAAT
5'SS Class:
major
3'SS Sequence:
CTTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CCTTCCTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.2
36
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
88.8
0.87
0.7
84.1
30.7
Minor 5ss
33.4
-1.9
3.3
48.6
47.1
Minor BPS
67.8
0.54
1.5
70.86
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019527
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030299
3773346 - 3774095
750