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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3808727_3808816_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3808727 - 3808816
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
TCCTCGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCCCCCTCATCC
Flanking Amino Acid:
VCQRLFNALQLDEGRAQRCS
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.1
50.9
40.6
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
71.4
0.48
0.8
65.1
30.6
Minor 5ss
34.2
-1.8
3.4
50.7
46
Minor BPS
49.3
-0
1.9
59.93
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023373
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040124
3808501 - 3809195
695