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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3811143_3811271_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3811143 - 3811271
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAA
U12 Branch Point Sequence:
ACCTCCTCACTT
Flanking Amino Acid:
YKASENAIVWKIKRMAGMKE
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.1
35.1
Major BPS
64.8
0.37
1.2
67.9
36.3
Major PPT
75.6
0.58
0.9
73.7
31.3
Minor 5ss
33.7
-1.9
3.2
40.4
40
Minor BPS
50.1
0.08
1.9
66
45.2

Associated Gene:

Gene:
AP2M1
Ensembl Gene ID:
ENSAPLG00000006667
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006946
3810576 - 3825439
14864