About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3812478_3814936_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3812478 - 3814936
Intron Length:
2459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
ACTTGTTTAACT
Flanking Amino Acid:
GKGTADETGKSGKQSIAIDD
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
79.2
0.66
0.9
75.9
38
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
68.1
0.65
1.7
81.74
40.3

Associated Gene:

Gene:
AP2M1
Ensembl Gene ID:
ENSAPLG00000006667
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006946
3810576 - 3825439
14864