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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3819352_3819686_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3819352 - 3819686
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGATGC
5'SS Class:
major
3'SS Sequence:
TACTCTCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
CCATCTTTTACT
Flanking Amino Acid:
NFVLIYELLDEILDFGYPQN
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.7
36.1
Major BPS
74.2
0.6
1
67
39.4
Major PPT
75.6
0.58
0.8
70.3
30.3
Minor 5ss
33
-1.9
3
38.6
41
Minor BPS
61.3
0.44
1.7
72.18
44.9

Associated Gene:

Gene:
AP2M1
Ensembl Gene ID:
ENSAPLG00000006667
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006946
3810576 - 3825439
14864