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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3819953_3825365_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3819953 - 3825365
Intron Length:
5413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GGTGGTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
GTTAACTTACCT
Flanking Amino Acid:
LISRVYRDDIGRNAVDAFRV
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
66.2
0.37
1
58.5
43
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
58.7
0.35
1.9
78.89
42.6

Associated Gene:

Gene:
AP2M1
Ensembl Gene ID:
ENSAPLG00000006667
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006946
3810576 - 3825439
14864