About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3839228_3839691_R


Intron Information:

Intron Rank:
15

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
3839228 - 3839691

Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CCA|GTGAGTTCT

5'SS Class:
major

3'SS Sequence:
TTCTTCTATCAAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTCAC

U12 Branch Point Sequence:
TTTCTTTTCACC

Flanking Amino Acid:
QSFRMAMGNPTAKNYGVFDF

Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73.5
0.55
1
71.6
34.4

Major BPS
90.1
0.99
0.7
91.6
20.3

Major PPT
72.6
0.51
1.1
72.1
37.3

Minor 5ss
39.6
-1.2
2.9
56.3
41.9

Minor BPS
61.4
0.34
1.7
74.92
35.8

Associated Gene:

Gene:
DVL3

Ensembl Gene ID:

Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

3838193 - 3851339
13147

3838193 - 3851339
13147