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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3840091_3840378_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3840091 - 3840378
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTGCGCTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
CATCACCTAACA
Flanking Amino Acid:
GGSAGSQHSEGSRSSGSNRS
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
58.7
0.22
1.2
67
38
Major PPT
68.4
0.41
1
61.2
40
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
50.2
0
1.9
64.34
41.1

Associated Gene:

Gene:
DVL3
Ensembl Gene ID:
ENSAPLG00000005855
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033097
3838193 - 3851339
13147
ENSAPLT00000006107
3839666 - 3864391
24726
ENSAPLT00000045015
3838193 - 3851339
13147