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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3841334_3841556_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3841334 - 3841556
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGGTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TTGTGTTTAACT
Flanking Amino Acid:
LKITIPNAFIGSDVVDWLYH
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
33.7
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
69.4
0.44
1.1
65.2
45.5
Minor 5ss
30.2
-2.3
3.3
39
46.2
Minor BPS
72.1
0.77
1.7
87.35
38.8

Associated Gene:

Gene:
DVL3
Ensembl Gene ID:
ENSAPLG00000005855
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033097
3838193 - 3851339
13147
ENSAPLT00000006107
3839666 - 3864391
24726
ENSAPLT00000045015
3838193 - 3851339
13147