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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3842670_3842791_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3842670 - 3842791
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CTGTTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
ATTTCTTAGAGC
Flanking Amino Acid:
AGPDSPCSDPGEPIRPIDPA
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
78.7
0.65
0.9
72.8
37.5
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
50.9
0.01
2
67.26
39.1

Associated Gene:

Gene:
DVL3
Ensembl Gene ID:
ENSAPLG00000005855
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006107
3839666 - 3864391
24726
ENSAPLT00000045015
3838193 - 3851339
13147