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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3843273_3843702_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3843273 - 3843702
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTACC
5'SS Class:
major
3'SS Sequence:
CTTTTTGCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTTGTTCTAACT
Flanking Amino Acid:
RVLREIVHKPGPITLTVAKC
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
70.2
38.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
85.5
0.8
0.8
80.7
31.4
Minor 5ss
35.2
-1.7
2.9
38
39.8
Minor BPS
55.7
0.26
1.8
75.41
41.9

Associated Gene:

Gene:
DVL3
Ensembl Gene ID:
ENSAPLG00000005855
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045015
3838193 - 3851339
13147
ENSAPLT00000033097
3838193 - 3851339
13147
ENSAPLT00000006107
3839666 - 3864391
24726