About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3849617_3864095_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
3849617 - 3864095

Intron Length:
14479

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAAAATCT

5'SS Class:
strong_major

3'SS Sequence:
CTCCCTTCCGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTCTAAC

U12 Branch Point Sequence:
CCGGCTCTAACT

Flanking Amino Acid:
QLESFDPTFSRVVKEEISDD

Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
82.9
0.78
0.9
77.5
31.3

Major BPS
72.3
0.55
1
73.3
28.9

Major PPT
77
0.61
0.7
72
26

Minor 5ss
39.9
-1.1
3.2
57.4
46.8

Minor BPS
49.3
0.03
1.8
63.53
47.1

Associated Gene:

Gene:
DVL3

Ensembl Gene ID:

Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

3839666 - 3864391
24726