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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3882481_3883381_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3882481 - 3883381
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCATTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTAAC
U12 Branch Point Sequence:
CTTTCTTTCATT
Flanking Amino Acid:
AASPQLDDIKVFQNEVLGTL
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
54.3
0.11
1.2
57.5
37.5
Major PPT
81.1
0.7
0.8
82.7
27.6
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
67.1
0.62
1.7
82.98
39.3

Associated Gene:

Gene:
EIF2B5
Ensembl Gene ID:
ENSAPLG00000005467
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005681
3872596 - 3890956
18361