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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3885035_3885346_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3885035 - 3885346
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CGCGTATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTAAGA
Flanking Amino Acid:
LKPRCVLSSQVVVGPGITLS
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72.5
0.51
1
65.1
40.3
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
64.5
0.45
1.9
76.36
40.9

Associated Gene:

Gene:
EIF2B5
Ensembl Gene ID:
ENSAPLG00000005467
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005681
3872596 - 3890956
18361