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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3886477_3886564_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3886477 - 3886564
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GTCCTGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
AACACTCTAACA
Flanking Amino Acid:
FVRGLLVNEEVLGNQIHMHV
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
77.7
0.62
0.9
68.4
42.1
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
51.3
0.04
1.7
60.54
39.1

Associated Gene:

Gene:
EIF2B5
Ensembl Gene ID:
ENSAPLG00000005467
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005681
3872596 - 3890956
18361