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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3886643_3887365_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3886643 - 3887365
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTACATTATGT
Flanking Amino Acid:
DCHISICSPQVAELFTDNFD
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.5
33.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.9
0.61
1
73.9
36.5
Minor 5ss
41
-1
3
56.7
47.6
Minor BPS
48.2
-0
2.1
72.55
43.9

Associated Gene:

Gene:
EIF2B5
Ensembl Gene ID:
ENSAPLG00000005467
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005681
3872596 - 3890956
18361