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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3888673_3888761_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3888673 - 3888761
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
CGTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GATTTCAAAACT
Flanking Amino Acid:
FNISTALEEHKLRRKMEKNV
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
69.9
41.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
86.5
0.82
0.8
84.1
30.8
Minor 5ss
34.7
-1.7
3.6
48.4
42.3
Minor BPS
53.2
0.18
1.9
74.69
41.6

Associated Gene:

Gene:
EIF2B5
Ensembl Gene ID:
ENSAPLG00000005467
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005681
3872596 - 3890956
18361