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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3888948_3889333_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3888948 - 3889333
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAATC
5'SS Class:
major
3'SS Sequence:
TTTCTCCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GCTTTCTGACGT
Flanking Amino Acid:
WKSAEIKEHLQKSKWCRHTS
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
73
36.4
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
86.5
0.82
0.6
84.9
22.6
Minor 5ss
40.2
-1.1
3.1
58.7
39.6
Minor BPS
46.8
-0.1
2
64.64
45.8

Associated Gene:

Gene:
EIF2B5
Ensembl Gene ID:
ENSAPLG00000005467
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005681
3872596 - 3890956
18361