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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_3900570_3901228_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3900570 - 3901228
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGGTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
ATGTAACGAAGT
Flanking Amino Acid:
RAAAGAGGGRRLLRRKSTCK
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
83.6
0.76
0.9
81
36.6
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
38.7
-0.7
2.2
58.64
43.5

Associated Gene:

Gene:
ABCC5
Ensembl Gene ID:
ENSAPLG00000003817
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033722
3900139 - 3948670
48532