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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_390880_392225_F

Intron Information:

Intron Rank:
148013
Intron Class:
major
Intron Phase:
Intron Coordinates:
390880 - 392225
Intron Length:
1346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GTGACTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
81.5
0.71
0.6
81.3
23.8
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
54.5
0.22
1.7
68.89
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029688
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044474
390658 - 406885
16228